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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 84041 REL 15: 1998-016-00 EXP ESCAPEMENT/PRODUCTIVITY SPR. CHINOOK/STEELHD
Project Number:
Title:
Escapement and Productivity of Spring Chinook and Steelhead
BPA PM:
Stage:
Closed
Area:
Province Subbasin %
Columbia Plateau John Day 100.00%
Contract Number:
84041 REL 15
Contract Title:
1998-016-00 EXP ESCAPEMENT/PRODUCTIVITY SPR. CHINOOK/STEELHD
Contract Continuation:
Previous: Next:
74313 REL 110: 1998-016-00 EXP ESCAPEMENT/PRODUCTIVITY SPR. CHINOOK/STEELHD
Contract Status:
Closed
Contract Description:
Columbia River basin managers have identified the John Day River subbasin spring Chinook and summer steelhead populations as index populations for assessing the effects of alternative future management actions in the Columbia River basin. A coordinated approach to the monitoring and evaluation of the status and trends in these anadromous salmonid populations and their habitats is therefore needed to support restoration and management efforts. The Oregon Department of Fish & Wildlife (ODFW) currently conducts the majority of fish monitoring in the subbasin, and coordinates monitoring with numerous other partners through the John Day Basin Partnership (JDBP). This proposed project provides the only subbasin-wide, rigorous, status and trend monitoring for the two anadromous focal species—steelhead and Chinook in the John Day River subbasin. This project is high priority based on emphasis the Northwest Power and Conservation Council Fish and Wildlife Pr... ogram, Subbasin Plan, and NOAA Fisheries have placed on monitoring and evaluation to guide restoration and adaptive management.

Our current monitoring and evaluation includes redd and spawner escapement measured with census (Chinook) and probabilistic (steelhead) surveys at both population and subbasin spatial scales. Freshwater production is measured by collecting emigrating smolts at five locations in the basin.  Our primary objective of this component of the project is to de-couple freshwater and marine influences on survival and productivity, so that we can identify how changes in freshwater conditions (e.g., restoration projects) influence productivity of salmonid populations.  Out-migrants per redd are estimated for both species at the population scale for the South Fork, Middle Fork, and Upper Mainstem populations, Desolation Creek, and for the John Day River basin as a whole for Chinook.  Marine survival is measured as smolt-to-adult returns (SAR) by Passive Integrated Transponder (PIT) tagging a representative subsample of emigrating juveniles.  The survival data from this component of the project provide a downstream reference for Snake River salmonid survival.  We have additionally used these data to inform life cycle models, explain ecological influences on fish metrics, quantify the presence of hatchery steelhead spawning in the John Day River (and the factors driving their presence), and developed fishery management targets.  Our adult abundance and juvenile production estimates for the Middle Fork John Day populations are a crucial cost-share component producing metrics for the Middle Fork John Day River IMW.

In addition to ongoing life-cycle monitoring, we have also added several Before-After-Control-Impact (BACI) style studies to measure changes in fish and habitat metrics at restoration sites.  These have been initiated in consultation with JDBP partners (1993-066-00 ODFW Oregon Fish Screens Project; 1984-021-00 ODFW John Day Habitat Enhancement; 2007-397-00 CTWS John Day Watershed Restoration; 2000-015-00 CTWS Upper John Day Conservation Lands; 2000-031-00 CTUIR Enhance Habitat in the North Fork John Day River; 2002-034-00 Wheeler SWCD Riparian Buffers in Wheeler County; 2002-035-00 Gilliam SWCD Riparian Buffers in Gilliam County; 2001-021-00 Wasco SWCD Riparian Buffers), and are intended to both evaluate outcomes and inform future projects through the JDBP’s adaptive management processes.  Some examples of these monitoring projects include the Vincent to Vinegar project on the Middle Fork John Day River (2007-397-00), the Murderers Creek Ranch project on the South Fork John Day (1984-021-00), and monitoring of steelhead response to riparian fencing and bass incursion in Thirtymile Creek (Lower Mainstem John Day River; 1984-021-00 and 2002-035-00).

The two primary tracks of our monitoring, population-scale and reach-scale, have both contributed to or directly created numerous technical presentations, guidance for managers, and peer-reviewed publications.  We will continue these two tracks, and propose to revisit some historic salmonid sampling sites to evaluate trend in habitat metrics and fish abundance at sites with varying degrees of restoration.  We also propose incorporation of new sites to monitor key uncertainties for salmonid populations in the John Day River subbasin.
  
Account Type(s):
Expense
Contract Start Date:
02/01/2023
Contract End Date:
01/31/2024
Current Contract Value:
$1,079,920
Expenditures:
$1,079,920

* Expenditures data includes accruals and are based on data through 31-Mar-2025.

BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Pricing Method:
Cost Reimbursement (CNF)
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30 km
20 mi
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Viewing 18 of 18 Work Statement Elements
Sort Order
WSEV ID
WE ID
Work Element Name
Title
Description
WSE Effective Budget
% of Total WSE Effective Budget
WSE Start
WSE End
A229670119Manage and Administer ProjectsSOW and Budget for FY 2024Draft and Final Scope of Work and Budget, Spending Plan and Property Inventory for contract renewal. Accrual estimate for ongoing contract and budget.$4,0000.37%02/01/202301/31/2024
B229671165Produce Environmental Compliance DocumentationProduce NEPA Checklist and Regulatory Clearances to BPA• Coordinate with ODFW and NOAA staff to receive a 4(d) take permit. • Provide a copy of the 4(d) permit to BPA • 4(d) take report • Provide a copy of the Section 6 bull trout coverage to BPA. • Coordinate with BPA staff to get NEPA Clearance$1,0000.09%02/01/202301/31/2024
C229672157Collect/Generate/Validate Field and Lab DataCollect Chinook Salmon and Steelhead Outmigrant Abundance and SAR Data at Rotary Screw TrapsCollect and enumerate emigrating spring Chinook and steelhead smolts using rotary screw traps. Five rotary screw traps will be placed at three locations: Middle Fork (2), upper Mainstem (2), and the South Fork John Day River (1). Two traps are used side by side at the upper Mainstem, and staggered upstream-downstream in the Middle Fork. Estimate trap efficiency and HUC 6 or near population scale abundance of emigrating juvenile Chinook and steelhead. Collect scale samples of juvenile steelhead that migrate past capture locations to determine age structure of the populations and to be able to detect changes in age structure (e.g. due to density-dependent effects as adult population abundance fluctuates).$185,00017.13%02/01/202301/31/2024
D229673157Collect/Generate/Validate Field and Lab DataMonitor/Maintain PIT Tag Interrogation Arrays• Monitor, troubleshoot, and maintain 12 PIT tag arrays located: at two locations in the Middle Fork John Day River near Armstrong Creek and Ritter (MJ1 and MJ2); at three locations in the Mainstem John Day River (JD0, JD1, JDM); at one location in Lower Thirtymile Creek (30M); at one location on Lower Rock Creek (RCX); at two locations on the South Fork John Day River (SJ1 and SJ2); at two locations on Bridge Creek (Wheeler County-BR0 and BR1), and at one location on Cottonwood Creek (JDC). • Perform routine maintenance and system checks for Passive Instream Arrays. • Conduct periodic read range and antenna performance testing. • Ensure PIT tag data is uploaded and backed-up.$75,0006.94%02/01/202301/31/2024
E229674157Collect/Generate/Validate Field and Lab DataCollect Steelhead Spawner Survey and Adult Escapement DataConduct steelhead spawning ground surveys to estimate steelhead escapement for the South Fork John Day River population. Adult steelhead redd surveys will be conducted from February 15 - June 1 annually based on standard ODFW methods for conducting steelhead redd surveys (Susac and Jacobs, 1999; Jacobs et al., 2000; Jacobs et al., 2001). Twelve to fifteen sites will be visited every two weeks throughout the season to quantify the cumulative redd count at each site. Surveyors will sample upstream from the downstream end of each survey reach. Each surveyor counts live fish and determines the fin-mark status of all live fish through observations. All redds are counted and flagged. A representative subsample reach will be visited at a greater frequency to validate bi-weekly redd enumeration. Redds with spawners present will also be measured to develop a database of redd size for each life history strategy.$90,0008.33%02/01/202301/31/2024
F229675157Collect/Generate/Validate Field and Lab DataConduct Juvenile Steelhead Density SurveysConduct juvenile fish abundance surveys using electrofishing and seining in the Lower Mainstem John Day and Middle Fork John Day steelhead populations. Juvenile sampling data for 2023 will be focused on key tributaries in the Middle Fork basin. We will primarily focus on tagging of juvenile steelhead in the Middle Fork tributaries, but due to sparse numbers of juvenile steelhead at some sites in the Middle Fork, we may use chinook parr as a surrogate for the expected movement patterns of juvenile steelhead. In the Lower Mainstem John Day population we will re-visit legacy habitat and juvenile fish sampling sites last sampled in 2012-2013, per our ISRP proposal. Juvenile steelhead sampling sites in the Lower John Day population will be paired with adult spawner data collected at a subset of the same sites by ODFW District Staff (cost share). We also propose to collect juvenile steelhead abundance data with greater spatial density in Thirtymile Creek in addition to the broadly drawn legacy sites located throughout the Lower Mainstem John Day. This would allow us to evaluate if Thirtymile Creek, and the planned monitoring investments in that stream, could serve as a potential indicator stream for the Lower Mainstem John Day population. Scales will be collected for age analysis and possible genetic analysis via collaboration with Columbia River Intertribal Fish Commission (2008-907-00) in future years.$76,9207.12%02/01/202301/31/2024
G229677157Collect/Generate/Validate Field and Lab DataUse Seines to Collect Spring Chinook SmoltsThe intent of this WE is to quantify wild smolt abundance for all populations (North Fork, Granite Creek, Middle Fork, Upper John Day) of spring Chinook salmon the John Day basin. Yearling spring Chinook smolts from all populations in the John Day River basin must emigrate through the Kimberly-Spray portion of the John Day River, and typically migrate through this area between February and May. The Kimberly to Spray reach of the river is low gradient, which facilitates boat seining as an effective means of capturing Chinook smolts. Enough Chinook smolts can be captured in this reach to monitor changes in abundance, size, migration timing and resulting adult age at maturation (e.g., Tattam et al. 2015) across years. Abundance data collected via seining are used to estimate total abundance of outmigrating spring Chinook smolts and spawner-smolt recruitment analysis, which quantify population productivity. Marking approximately 1,500 Chinook smolts with PIT tags facilitates pre- and post-season estimation of adult escapement to the Columbia and John Day rivers.$75,0006.94%02/01/202301/31/2024
H229678157Collect/Generate/Validate Field and Lab DataCollect Fish Habitat DataThe goal of this work element is to conduct habitat surveys at legacy habitat sites in the Lower Mainstem John Day River during 2023.$90,0008.33%02/01/202301/31/2024
I229679158Mark/Tag AnimalsPIT Tag Juvenile Chinook SalmonWe will PIT tag approximately 4,000 juvenile spring chinook (yearling and subyearling) in the John Day River basin. Approximately 1,500 juvenile Chinook outmigrants will be PIT tagged at the Mainstem Screw trap operated under Work Element D. Another roughly 1,500 Chinook smolts will be PIT tagged during the seining under Work Element H. Approximately 1,000 Chinook parr will be PIT tagged in the Upper Mainstem John Day River during August 2023 in cooperation with the Warm Springs Tribes. Data from PIT tagged parr will be used to estimate abundance, growth, and survival. These data provide important population vital rate information, and provide a measure of population response to habitat alterations.$75,0006.94%02/01/202301/31/2024
J229680158Mark/Tag AnimalsPIT Tag Emigrating Steelhead Smolts at Rotary Screw TrapsPIT tag approximately 6,000 wild out-migrating juvenile steelhead at the rotary screw traps operated under Work Element D.$83,0007.69%02/01/202301/31/2024
K229681158Mark/Tag AnimalsPIT Tag Juvenile Steelhead in Lower Mainstem John Day PopulationCapture and PIT tag juvenile steelhead in up to 4 Lower Mainstem John Day Tributaries-- on the west side of the Lower John Day River.$00.00%02/01/202301/31/2024
L229683158Mark/Tag AnimalsPIT Tag Smallmouth BassSmallmouth bass in the Middle Fork of the John Day River in and around the Oxbow Conservation Area (if present during sampling) and at the Ritter rotary screw trap site will be PIT tagged to determine seasonal movements, habitat use and potential impacts to juvenile anadromous salmonids. Tagged bass will be redetected via permanent and seasonal PIT arrays, and mobile PIT array surveys.$1,0000.09%02/01/202301/31/2024
M229684162Analyze/Interpret DataEstimate Smolt Abundance, Productivity, Age, and SARWe analyze steelhead and spring chinook smolt trapping and spring chinook seining data to estimate out-migrant abundance. Out-migrant estimates are plotted against parental spawner abundance to estimate freshwater productivity. Out-migrants per spawner will be used to conduct stock-recruitment curves for assessment of population productivity and temporal trends in productivity. Scale subsamples from out-migrant steelhead are aged using conventional methods to assign fish to cohorts through use of an age-length key. PIT tag detections at John Day (juvenile bypass system) and Bonneville (adult fish ladders) dams are collected from PTAGIS and DART to estimate smolt to adult survival ratios (SAR) for John Day River origin summer steelhead and spring Chinook salmon. John Day River SAR ratios are estimated from smolt detection at John Day Dam to adult detection at Bonneville Dam.$100,0009.26%02/01/202301/31/2024
N229685162Analyze/Interpret DataEstimate Steelhead Escapement and Redd DensityData from field surveys will be compiled to provide population metrics of steelhead status. Quantitative metrics include estimates of adult spawner escapement, redd density estimates, spatial structure and diversity (PHoS).$73,0006.76%02/01/202301/31/2024
O229687159Transfer/Consolidate Regionally Standardized DataSubmit & Acquire PIT Tag Data to/from PTAGIS and NRIMPPIT Tag data will be uploaded to the PTAGIS database in a timely fashion. A semi-automated system will be developed for efficient data transfer. Smolt trapping data are transferred and housed in ODFW's NRIMP database.$45,0004.17%02/01/202301/31/2024
P229688161Disseminate Raw/Summary Data and ResultsATLAS Data Stewardship and PresentationHelp manage geo-spatial data for the ATLAS partnership via an AGOL account. Actively disseminate fish and habitat monitoring data during ATLAS meetings and in response to partnership requests to support data-driven restoration planning.$30,0002.78%02/01/202301/31/2024
Q229689132Produce Progress (Annual) ReportRM&E Technical ReportEach annual report will be organized as follows: Abstract Introduction Description of project area Materials and methods Results and discussion of results by objective Summary and conclusions Appendices of supplemental information$75,0006.94%02/01/202301/31/2024
      
$1,079,920
   

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Effective implementation management and timely contract administration A: 119. SOW and Budget for FY 2024 01/31/2024 01/31/2024
Environmental Compliance B: 165. Produce NEPA Checklist and Regulatory Clearances to BPA 01/31/2024 01/31/2024
Produce accessible, error-checked datasets C: 157. Collect Chinook Salmon and Steelhead Outmigrant Abundance and SAR Data at Rotary Screw Traps 01/31/2024 01/31/2024
Produce accessible, error-checked datasets D: 157. Monitor/Maintain PIT Tag Interrogation Arrays 01/31/2024 01/31/2024
Produce accessible, error-checked datasets E: 157. Collect Steelhead Spawner Survey and Adult Escapement Data 01/31/2024 01/31/2024
Produce accessible, error-checked datasets F: 157. Conduct Juvenile Steelhead Density Surveys 01/31/2024 01/31/2024
Produce accessible, error-checked datasets G: 157. Use Seines to Collect Spring Chinook Smolts 01/31/2024 01/31/2024
Produce accessible, error-checked datasets H: 157. Collect Fish Habitat Data 01/31/2024 01/31/2024
PIT tag spring Chinook Salmon. I: 158. PIT Tag Juvenile Chinook Salmon 01/31/2024 01/31/2024
PIT tag steelhead at Rotary Screw traps J: 158. PIT Tag Emigrating Steelhead Smolts at Rotary Screw Traps 01/31/2024 01/31/2024
Lower Mainstem John Day steelhead Parr tagging K: 158. PIT Tag Juvenile Steelhead in Lower Mainstem John Day Population 01/31/2024 01/31/2024
PIT tagging of smallmouth bass L: 158. PIT Tag Smallmouth Bass 10/30/2023 10/30/2023
Deliverable: An accessible, error-checked data set with metadata M: 162. Estimate Smolt Abundance, Productivity, Age, and SAR 01/31/2024 01/31/2024
Deliverable: An accessible, error-checked data set with metadata N: 162. Estimate Steelhead Escapement and Redd Density 01/31/2024 01/31/2024
PIT Data Upload O: 159. Submit & Acquire PIT Tag Data to/from PTAGIS and NRIMP 01/31/2024 01/31/2024
AGOL Support P: 161. ATLAS Data Stewardship and Presentation 01/31/2024 01/31/2024
Completed Annual Report Q: 132. RM&E Technical Report 01/31/2024

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Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Mid-Columbia River Spring ESU
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 158 Mark/Tag Animals
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Middle Columbia River DPS (Threatened)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 158 Mark/Tag Animals
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 119 SOW and Budget for FY 2024
B 165 Produce NEPA Checklist and Regulatory Clearances to BPA
C 157 Collect Chinook Salmon and Steelhead Outmigrant Abundance and SAR Data at Rotary Screw Traps 09/06/2023
D 157 Monitor/Maintain PIT Tag Interrogation Arrays 09/06/2023
E 157 Collect Steelhead Spawner Survey and Adult Escapement Data 09/06/2023
F 157 Conduct Juvenile Steelhead Density Surveys 09/06/2023
G 157 Use Seines to Collect Spring Chinook Smolts 09/06/2023
H 157 Collect Fish Habitat Data 09/06/2023
I 158 PIT Tag Juvenile Chinook Salmon 09/06/2023
J 158 PIT Tag Emigrating Steelhead Smolts at Rotary Screw Traps 09/06/2023
K 158 PIT Tag Juvenile Steelhead in Lower Mainstem John Day Population 09/06/2023
L 158 PIT Tag Smallmouth Bass 09/06/2023
M 162 Estimate Smolt Abundance, Productivity, Age, and SAR
N 162 Estimate Steelhead Escapement and Redd Density
O 159 Submit & Acquire PIT Tag Data to/from PTAGIS and NRIMP
P 161 ATLAS Data Stewardship and Presentation
Q 132 RM&E Technical Report
R 185 Periodic Status Reports for BPA